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Identification and characterization of a new HNH restriction

Abstract Restriction–modification (R-M) systems form a large superfamily constituting bacterial innate immunity mechanism. The restriction endonucleases (REases) are very diverse in subunit structure, DNA recognition, co-factor requirement, and mechanism of action. Among the different catalytic motifs, HNH active sites containing …

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Coordinated Actions of Cas9 HNH and RuvC Nuclease …

The catalytic cycle of SpyCas9 is initiated with the formation of a binary complex when it binds to sgRNA, which induces large conformational changes in the protein to accommodate a duplex DNA. 20,23,29 The guide region of sgRNA adopts a pseudo A-form conformation and forms a seed region that is stabilized by the BH of SpyCas9. 29 …

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Structures, Mechanisms, and Functions of His-Me Finger …

The historical name of the His-Me finger family, HNH, was based on sequence homology among a sub-group of homing endonucleases [9, 10].Crystal structures of the nuclease domain of ColE7 [11] and ColE9 [12], two prototype HNH-family endonucleases, revealed that the HNH motifs are folded in a ββα-metal topology, with …

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DNA Binding and Cleavage by the HNH Homing …

The structure of I-HmuI bound to its DNA target site was determined to 2.9 Å resolution, using selenomethionyl (SeMet) derivatized protein and the single wavelength anomalous dispersion (SAD) method of phase calculation to calculate the initial electron density map, which was of extremely high quality and allowed us to build the entire …

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Henan Zlin Heavy Industry Co., LTD founded in 2016, focuses on the R&D and manufacturing of construction machinery. It is a comprehensive multi-sector operation …

Catalytic-state structure and engineering of …

CRISPR–Cas9 systems have revolutionized the field of genome editing. This work reports rare structures of a Cas9 enzyme (St1Cas9) in its HNH catalytic state, providing mechanistic insights ...

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Exploring alternative catalytic mechanisms of Cas9 HNH …

The HNH Domain has a ββα-metal fold while the RuvC domain has an RNase H fold and shares structural similarity with the members of retroviral integrase superfamily. 1. The structural changes that are involved in the activation of CRISPR have been discussed extensively. But from a mechanistic point of view, what is mostly missing is the ...

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HNH proteins are a widespread component of phage DNA …

HK97 gp74 Plays an Essential Role in Phage Head Morphogenesis. To determine whether gp74 plays a role in phage assembly, we created an HK97 phage mutant bearing an amber nonsense mutation in gene 74 (HK97 74am).Although this mutant produced a titer of ∼10 9 plaque-forming units (pfu) per milliliter when grown in a …

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Direct detection of N−H⋯N hydrogen bonds in biomolecules by …

A nuclear magnetic resonance (NMR) experiment is described for the direct detection of N–H⋯N hydrogen bonds (H-bonds) in 15N isotope-labeled biomolecules. This quantitative HNN-COSY ...